Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| LGG | rs74050440 | chr11:2962443 | G/T | 2.97E-5 | 402 | 15.57 | 14.75 | 11.8 | KM Plot |
| LGG | rs7426389 | chr3:38960161 | G/T | 1.58E-5 | 407 | 15.13 | 16.42 | 13.5 | KM Plot |
| LGG | rs74267359 | chr2:114458896 | T/A | 0 | 405 | 15.5 | 14.53 | 0.23 | KM Plot |
| LGG | rs74286657 | chr3:168564301 | T/C | 2.99E-5 | 404 | 15.57 | 13.7 | 4.1 | KM Plot |
| LGG | rs74320091 | chr7:64929417 | C/T | 7.7E-8 | 394 | 15.32 | 15.28 | 2.27 | KM Plot |
| LGG | rs74362266 | chr3:168546036 | C/T | 2.89E-5 | 406 | 15.57 | 13.7 | 4.1 | KM Plot |
| LGG | rs744363 | chr10:98367384 | C/T | 6.18E-5 | 407 | 15.2 | 13.87 | 15.63 | KM Plot |
| LGG | rs74496234 | chr2:17979556 | T/C | 1.51E-8 | 403 | 15.25 | 16.22 | 7.33 | KM Plot |
| LGG | rs74549509 | chr3:168577066 | T/A | 3.14E-5 | 403 | 15.47 | 13.7 | 4.1 | KM Plot |
| LGG | rs74589682 | chr3:153689125 | C/T | 0 | 405 | 15.03 | 17.37 | 0.23 | KM Plot |
| LGG | rs7460653 | chr8:18266983 | G/C | 8.08E-5 | 404 | 14.83 | 16.33 | 11.82 | KM Plot |
| LGG | rs74622342 | chr15:84482087 | A/G | 2.22E-16 | 400 | 15.32 | 16.13 | 6.6 | KM Plot |
| LGG | rs74651754 | chr9:94631331 | G/A | 6.99E-5 | 407 | 15.18 | 16.47 | 17.55 | KM Plot |
| LGG | rs74661797 | chr7:150738570 | G/A | 0.000154 | 404 | 15.32 | 10.77 | 8.97 | KM Plot |
| LGG | rs74665363 | chr16:77763329 | C/T | 1.26E-5 | 404 | 15.83 | 13.63 | 8.03 | KM Plot |